Biocomputing Support >

External Scientific Toolkit

Align Multiple Sequences Clustalw (EBI, BCM),Clustalx, Dalign, T-Coffee, POA
Align Two Sequences Lalign, Alion, NCBI Blast2seqs
Align Whole Genome PipMaker, MUMmer
Alignment Editing ReadSeq,JalView, BoxShade, ESPRIPT, BioEdit
Biochemistry Boehringer Mannheim Map, KEGG Pathway, EcoCyc, Enzyme, Klotho, Brenda, Ligand, Protein Mutant Database
Evolution Phylip, TreeView
Gene Prediction ORF Finder, GeneMark, GlimmerM, MZEF, FirstEF, GeneID, GenomeScan, TwinScan, GrailExp
Genome Entrez Genome, LocusLink, UCSC Genome Browser, Ensembl, TIGR, GenomeNet, WIT/ERGO, MBGD, PEDANT
Literature PubMed, Bookshelf
Microarray data analysis J-Express, dChip, GenMapp, EisenLab, GeneSpring, Cytoscape
Microarray data repository GEO(NCBI), ArrayExpress(EBI), CIBEX(DDBJ)
Nucleotide Sequence NCBI, VecScreen, WebCutter, Primer3, geneGC, CpGProD, Dot Plot, RepeatMasker, Reverse Complement, Restriction Map, Translate, Assembler, Phred and Phrap, Consed, Other
Organism Database HIV, E. coli (UWisconsin, PEC, EcoCyc), Bacillus subtilis, Yeast (SGD, pombe GeneDB), Fruitfly, Worm, Mouse, Rat, Human
Protein Sequence Uniprot, Swissprot, Trembl, Refseq, Entrez Protein, PIR, Expasy Tools
Protein Secondary Structure MMDB, Macromolecular Structure Database, SCOP, CATH, Swiss-Model, PSIPRED, PredictProtein
Protein 3-D Structure PDB, DALI, Prediction, Entrez Structure, GenomeWeb, RasMol, EsyPred3D, VAST
Protein Domain InterProScan, FingerPrintScan, PPSearch, CDD, Prosite, Blocks, Prints, Pfam, Smart, ProDom, COG, MiniMotif
Protein Interaction BRITE, DIP, BIND, BioCarta, MINT
Protein Specialty TRANSFAC, EPD, GPCR, IMGT, REBASE, CAZy, Peptide Database, Protein Kinase Resource
RNA Secondary Structure Vienna, GeneBee
RNAi RNAi.net, Ambion, Invitrogen RNAi Central
Similarity Search BLAST (NCBI), FASTA(EBI, U.Virginia), SSEARCH, BLAT
Other BioNumbers